Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNATGTPVAPESCQQLAAGGHSRLIVLHYNHSGRLAGRGGPEDGGLGALRGLSVAASCLVVLENLLVLAAITSHMRSRRWVYYCLVNITLSDL-LTGAAYLANVLLSGARTFRLAPAQWFLREGLLFTALAAST--FSLLFTAGERFATMVRPVAESGATKTSRVYGFIGLCWLLAALLGMLPLLGW--------NCLCAFDRCSSLLPLYSKRYILFCLVI-FAGVLATIMGLYGA-IFRLVQASGQKAPRPAARRKARRLLKTVLMILLAFLVCWGPLFGLLLADVFGSNLWAQEYLRGMDW------ILALAVLNSAV-NPIIYSFRSREVCRAVLSFLCCGCLRLGMRGPGDCLARAVEAHSGASTTDSSLRPRDSFRGSRSLSFRMREPLSSISSVRSI |
| 1F88 Chain:A ((55-343)) | ---------------------------------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNL-EGF-FATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY-IFTH--------QGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNP----------------STTVSKTETSQVAPA------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202306 for 1946 contacts (-104.0/contact) +
2D Compatibility (PS) -26860 + (NN) -12800 + (LL) 6216
1D Compatibility (HY) -25200 + (ID) 3450
Total energy: -264400.0 ( -135.87 by residue)
QMean score : 0.260
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