Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MESGLLRPAPVSEVIVLHYNYTGKLRGARYQPGAGLRADAVVCLAVCAFIVLENLAVLLVLGRHPRFHAPMFLLLGSLTLSDLLAGAAYAANILLSGPLTLKLSPALWFAREGGVFVA------LTASVLSLLAIALERSLTMARRGPAPVSSRG-----RTLAMAAAAWGVSLLLGLLPALGWNCLGRLD---------AC--STVLPLYAKAYVLFCVLAFVGILAAICALYARIYCQVRANARRLPARPGTAGTTSTRARRK-PRSLALLRTLSVVLLAFVACWGPLFLLLLLDVACPARTCPVLLQADPFLGLAMANSLLNPIIYTLTNRDLRHALLRLVCCGRHSCGRDPSGSQQSASAAEASGGLRRCLPPGLDGSFSGSERSSPQRDGLDTSGSTGSPGAPTAARTLVSEPAAD |
| 3VGA Chain:A ((6-303)) | -----------------------------------SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVG-------VLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIR----IPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ--SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLML-GVYLRIFLAARRQLKQMESQP----LPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -227231 for 1940 contacts (-117.1/contact) +
2D Compatibility (PS) -28486 + (NN) -19133 + (LL) 2788
1D Compatibility (HY) -25200 + (ID) 3650
Total energy: -300912.0 ( -155.11 by residue)
QMean score : 0.387
|
|
|