Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPSAIEAIYIILIAGELTIGIWGNGFIVLVNCIDWLKRRDISLIDIILISLAISRICLLCVISLDGFFMLLFPGTYGNSVLVSIVNVVWTFANNSSLWFTSCLSIFYLLKIANISHPFFFWLKLKINKVMLAILLGSFLISLIISVPKNDDMWYHLFKVSHEENITWKFKVSKI--PGTFKQLTLNLGVMVPFILCLISFFLLLFSLVRHTKQIRLHAT------------------------------------------------------------------------------------------------------------------------------------------------------GFRDPSTEAHMRAIKAVIIFLLLLIVYYPVFLVMTSSALIP-------------QGKLVLMIGDIVTVIFPSSHSFILIMGNSKLREAFLKMLRFVKCFLRRRKPFVP |
| 3ODU Chain:A ((47-497)) | ----NKIFLPTIYSIIFLTGIVGNGLVILVM---GYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAI---VHAT-NSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFAN----VSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -237285 for 2041 contacts (-116.3/contact) +
2D Compatibility (PS) -29466 + (NN) -4652 + (LL) 2012
1D Compatibility (HY) -16800 + (ID) 2000
Total energy: -288191.0 ( -141.20 by residue)
QMean score : 0.226
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