Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------------AVANCGQVVSYLAPCISYAMGRVSVPGGGC---CSGVRGLNAAAA-----------TPADRKATCTCLKQQASGM-----GGIKPDLVAGIPSKCGVNIPYAISPRTDCSKVR--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAA--GSVVDALRAVRNA------APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28359 for 414 contacts (-68.5/contact) +
2D Compatibility (PS) -8490 + (NN) -3135 + (LL) 376
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -42508.0 ( -102.68 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: