Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALSCGSVNSNLAACIGYVLQGG--VIPPACCSGVKNLNSIAKTTPDRQQACNCIQGA-ARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR
2RKN Chain:A ((3-75))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSF--GVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48371 for 467 contacts (-103.6/contact) +
2D Compatibility (PS) -7306 + (NN) -362 + (LL) 912
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -57077.0 ( -122.22 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: