Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRVLSEDKKVACIVT--DLQVCLSALETPIP-PSAECCKNLKI-----------QKSCLCDYMENPSIEKY--LEP--ARKVFAACGMPYPRC
1AFH Chain:A ((2-80))
---------ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32044 for 408 contacts (-78.5/contact) +
2D Compatibility (PS) -6256 + (NN) -3090 + (LL) 1148
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -44642.0 ( -109.42 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: