Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TVVGGWGIEEKAACIVT--NLMSCLPAILKGSQ-PPAYCCEMLKE-----------QQSCLCGYIKSPTFGHY--VIPQNAHKLLAACGILYPKC
1AFH Chain:A ((2-80))
-----------ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47471 for 432 contacts (-109.9/contact) +
2D Compatibility (PS) -6394 + (NN) -1582 + (LL) 724
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -57423.0 ( -132.92 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: