Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSICDMDINDMQKCRPAITGNNPPPPVNDCCVVVRKANFECLCRFKFY--LPILRIDPSKVVALVAKCGVTTVPRSCQV
1N89 Chain:A ((5-65))
--------SQLAVCASAILSG--AKPSGECCGNLRAQQ-GCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36158 for 375 contacts (-96.4/contact) +
2D Compatibility (PS) -6058 + (NN) -4932 + (LL) 1088
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -48660.0 ( -129.76 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: