Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGKCGKTPAEKVALKLAPCAKAAQDPGARPPAACCAAVRDIGTHQ--S----HACLCAVLLSSTVRRS-GVKPEVAITIPKRCKLANRPVGYKCGAYTLPSLQG
1T12 Chain:A ((2-78))
------ITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTC--LKS-AAGAISGINLGKAAGLPSTCGVNIP----------------
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30603 for 481 contacts (-63.6/contact) +
2D Compatibility (PS) -7499 + (NN) -7497 + (LL) 876
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -48873.0 ( -101.61 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: