Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDTGAAAGVPSCASKLVPCGGYLNATAAPPPASCCGPLREAAA-----N--ETACLCAILTNKAALQAF-GVAPEQGLLLAKRCGVTTDASACAKSASSSATAAAAAAV
1SIY Chain:A ((3-78))
---------CGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSC-L-KAA--AGAVRGINPNNAEALPGKCGVNIP--------------------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34349 for 477 contacts (-72.0/contact) +
2D Compatibility (PS) -6882 + (NN) -1931 + (LL) 2960
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -45852.0 ( -96.13 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: