Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------KMVTYPNGDRHCVMAQGQV-ISACLQQANGLPHA----DCCYAINDVNRYVETIYGRLALCKCFQEILKDSRFTKLIGMPE---KCAIPNA----VPFDPKTDCDRFVEHIWLKMF--------
1JMX Chain:A ((364-494))
KVEEVKVVPAFSIARIGENGASVPKVQGRFEAEAWGKDANGQPLRIGYLPASWKVEPFNERAVE----DEDVKFAGKMQADGVFVPGGAGPNPERKMMTNNAGNLKVIATLADGGQTGEGHMIVTVQRWNNPPLP
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43523 for 633 contacts (-68.8/contact) +
2D Compatibility (PS) -10842 + (NN) -692 + (LL) 224
1D Compatibility (HY) 2000 + (ID) 850
Total energy: -53683.0 ( -84.81 by residue)
QMean score : 0.164
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: