Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VDCKDVNSNLATCIPYLTGKDT-APPTTCCDGVKNLPKIAQTTADRRAACECVKAA-ASHYTINEKAASSLPKDCGAVINIPISKTTNCQQIN
2RKN Chain:A ((3-75))
DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21173 for 483 contacts (-43.8/contact) +
2D Compatibility (PS) -7352 + (NN) -2079 + (LL) 1184
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -31820.0 ( -65.88 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: