Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGQVSSALGPCAAYAKGSGT-SPSAGCCSGVKRLAGLARSTADKQATCRCLKSV-A--GAYNAGRAAGIPSRCGVSVPYTISASVDCSKIH
2RKN Chain:A ((3-75))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23731 for 469 contacts (-50.6/contact) +
2D Compatibility (PS) -7128 + (NN) -480 + (LL) 1504
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -32235.0 ( -68.73 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: