Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--QQC--SAAQLAACAPAIISGSP--PTASCCSNLR-AQEPCFCQYARNPAYSSY-INSPNARRTLTSCGIAVP-SC
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26034 for 428 contacts (-60.8/contact) +
2D Compatibility (PS) -7127 + (NN) -2973 + (LL) 0
1D Compatibility (HY) -5600 + (ID) 1100
Total energy: -42834.0 ( -100.08 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: