Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QVTLCGMTKEGFASCKPSVQTGVNPLPPSYSCCSALEKADL----------SCLCFFKKNYPKMLTDN-NIDPNLAMQLPAKCNMAGSFSCK
1T12 Chain:A ((3-78))
---TCGQVTSNLAPCLAYLRNTG----PLGRCCGGVKALVNSARTTEDRQIACTC-LKSAA----GAISGINLGKAAGLPSTCGVNIP----
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18488 for 436 contacts (-42.4/contact) +
2D Compatibility (PS) -6619 + (NN) -2424 + (LL) 844
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -29437.0 ( -67.52 by residue)
QMean score : 0.328
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: