Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVCDMSNEQFMSCQPAAAKTTDPPAAPSQACCDALAGA--------DLK--CLCGYKNSPWMGVY-NIDPKRAMELPAKCGLATPPDC
1SIY Chain:A ((2-79))
-TCGQVQGNLAQCIGFLQKG----GVVPPSCCTGVKNILNSSRTTADRRAVCSCL-KAA--AGAVRGINPNNAEALPGKCGVNIPY--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16943 for 456 contacts (-37.2/contact) +
2D Compatibility (PS) -6806 + (NN) -3734 + (LL) -72
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -30505.0 ( -66.90 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: