Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------------------------APPSCQTVTTQLAPCLSYIQNRVKG----GGNPSVPCCTGINNIYELAK----TKEDRVAICNCLKNAFIHAG--NVNPTLVAEL------PKKCGISFNMPPIDKNYDCNT
1NGK Chain:A ((3-128))
KSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHP---------RLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF-----------
General information:
TITO was launched using:
RESULT:
Template:
1NGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8508 for 344 contacts (-24.7/contact) +
2D Compatibility (PS) -8012 + (NN) -3739 + (LL) 16
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -22343.0 ( -64.95 by residue)
QMean score : 0.203
(partial model without unconserved sides chains):
PDB file :
Tito_1NGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NGK-query.scw
PDB file :
Tito_Scwrl_1NGK.pdb
: