Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -------------VTCSPAQLSSCVSAITSSTPP-----SKLCCSKIKEQKPCLCQYLKNPNLQ-----KFINTPNARKVASTCGTPFPKC------------------------------------------------------ |
1KNG Chain:A ((50-193)) | RPAPQTALPPLEGLQADNVQVPGLDPAAFKG-KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KNG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -9327 for 357 contacts (-26.1/contact) +
2D Compatibility (PS) -6875 + (NN) 204 + (LL) 52
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -18996.0 ( -53.21 by residue)
QMean score : 0.422
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