Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AQTCSASL---ANLNACAPFVV------LGAAT--------TPSSDCCTALQSVDHECLCNTLRI----------------------ASRVPAQCNLPP-LSCGAN
1SM7 Chain:A ((3-106))
-QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPF-
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51707 for 410 contacts (-126.1/contact) +
2D Compatibility (PS) -6353 + (NN) -164 + (LL) 64
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -63860.0 ( -155.76 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: