Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGACGKTSPDQEAMKLAPCAMAAQDAK------A---AVSDSCCAQVRSIGQNPSCLCSVMLSDMA---KA------------SG----I-K-AEIAITIPKRCNIANRPVGYKCGDYTLP
1B1U Chain:A ((16-110))
--------------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG----------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40291 for 415 contacts (-97.1/contact) +
2D Compatibility (PS) -6691 + (NN) -1948 + (LL) 368
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -53212.0 ( -128.22 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: