Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGCDIDLLLPCLNASRDPRVKPDKRCCDAIRQFLPPRKQKS--AIDCLCRLATSKEAVALKINLSAAIAIPQKCGIKFE----QRFYCQG
1BWO Chain:A ((4-88))
-GHVDSLVRPCLSYVQGG-PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIA--RGIHNLNEDNARSIPPKCGVNLPYTISLNIDCS-
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30000 for 500 contacts (-60.0/contact) +
2D Compatibility (PS) -8202 + (NN) -2341 + (LL) 240
1D Compatibility (HY) -1600 + (ID) 1000
Total energy: -42903.0 ( -85.81 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: