Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ASTPSSNCESAQM---KLVPCLTYVTGSDS-------K-----PPTECCSGLKDLNTNNPTCLCQLITQLNSTSSGS--SNVNVAKVLALPRDCSVTLITSDCPGKDLL
1S6D Chain:A ((9-102))
-----SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMS--QPCQ-----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30995 for 553 contacts (-56.0/contact) +
2D Compatibility (PS) -8271 + (NN) -5018 + (LL) 316
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -49218.0 ( -89.00 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: