Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCPQTI-TFSPCLTNVGNTGTPPAYDSQCCKLVRDPKW--------TDQCLCAVVSSH-FPGVDETKALNLAHDCGRRVP----KGIYCDGRPVPP
1AFH Chain:A ((3-92))
-SCGQVASAIAPCISYARGQGSGP--SAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17746 for 550 contacts (-32.3/contact) +
2D Compatibility (PS) -8168 + (NN) -6798 + (LL) 128
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -35534.0 ( -64.61 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: