Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACSLSQVRTCTSAVIAPNQMPSQQCCSELSAITDFNCFCSMLLN--------QGTNLN-----QDYINNALLIPSKCGEQGRNLRGQRCGNYAIP
2LVF Chain:A ((46-100))
---------------------MSECCEQLEGM-DESCRCEGLRMMMRMMQQKEM-QPRGEQMRRMM-RLAENIPSRCNL----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11780 for 194 contacts (-60.7/contact) +
2D Compatibility (PS) -4394 + (NN) -1511 + (LL) 2220
1D Compatibility (HY) -1200 + (ID) 600
Total energy: -17265.0 ( -88.99 by residue)
QMean score : 0.245
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: