Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAQCGGRNLSILAPCLPAAKANVQPSAACCRALSSFATNTGEDCLCAAASSQQQS-----G--------AKVEFAKYIPQKCQLTYKAGIVCNGVVIPGGQ
2LVF Chain:A ((46-101))
-------------------------MSECCEQLEG----MDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8600 for 214 contacts (-40.2/contact) +
2D Compatibility (PS) -4808 + (NN) -2198 + (LL) 2128
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -17228.0 ( -80.50 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: