Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVQCGQVTQLMAPCMPYLSGAPGMTPYGICCNSLRVLAELAATTADRVAACNCVRAAAGAGGFPPVDFTRAAGLPAACGLKINFAISPNMDCNQVTDEP
1AFH Chain:A ((1-93))
AISCGQVASAIAPCISYARGQG-SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG--VSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN---
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99248 for 764 contacts (-129.9/contact) +
2D Compatibility (PS) -9787 + (NN) -5625 + (LL) -628
1D Compatibility (HY) -5600 + (ID) 1950
Total energy: -122838.0 ( -160.78 by residue)
QMean score : 0.329
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: