Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GSDCQNDIQMLETTCYKYVAKDAPTSPPSQECCDTMNGVDV----------PCVCSYLGAPGIKENISMEKVFYVAQQCGVSIP-----GNCGGSKRA
1BWO Chain:A ((2-89))
--DCGHVDSLV-RPCLSYVQGG-P--GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI-HNLNEDNARSIPPKCGVNLPYTISLNIDCSR---
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28102 for 462 contacts (-60.8/contact) +
2D Compatibility (PS) -7519 + (NN) -1572 + (LL) 444
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -41399.0 ( -89.61 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: