Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------AQCNAGQLIVCAPAII-GGAAP-----TAACCSNLRAQQGCFCEFARN-PA--YASYIKSQTARKAIAACRVALPRCP-------------------------------
1F9M Chain:A ((10-121))
MEAIVGKVTEVNKDTFW---PIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVV--PTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19322 for 328 contacts (-58.9/contact) +
2D Compatibility (PS) -6729 + (NN) -86 + (LL) 548
1D Compatibility (HY) -3600 + (ID) 450
Total energy: -29639.0 ( -90.36 by residue)
QMean score : 0.164
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: