Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EGCDNDRQDMIRECAKYQKFPKEPKKDPSKACCAVWQKADF----------PCLCKD-----V-TKELEKVAYVAKFCKWPFP----SGYKCGSYTFPLGQ
1AFH Chain:A ((3-92))
-SCGQVASAI-APCISYARG-QGS--GPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1309 for 484 contacts (2.7/contact) +
2D Compatibility (PS) -7461 + (NN) -5941 + (LL) 464
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -15129.0 ( -31.26 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: