Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QREPAKCGSSDAGSVLMPCFAFLEQQSREPSARCCSAVANSTQK----E--PPRCLCVFLDQLAR-AMNRTQPLQLPSLCGDARL----TAERCKGLFVANRFA
1SIY Chain:A ((2-89))
-------TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNS--------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20303 for 540 contacts (-37.6/contact) +
2D Compatibility (PS) -7517 + (NN) 1037 + (LL) 1360
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -28723.0 ( -53.19 by residue)
QMean score : 0.206
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: