Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SHNVGALASSCEESDFLYKSL-PCVKG-------------GTVMSTPSSQCCVAVRAMALECLCRLIVSA--------TGASSEQTVKNYVKTCKMKAPPGFKC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQ---PCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34989 for 534 contacts (-65.5/contact) +
2D Compatibility (PS) -7848 + (NN) 2401 + (LL) -180
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -43266.0 ( -81.02 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: