Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACSNNYIQLAGCLNAVSSSAGYPGSSCCTAVSHFKN--------DVNCLCSTLVAAKNAGV-IRNMPNALTVPKRCGFKNNIP--KNFRCAGYKVGS
2ALG Chain:A ((3-89))
TCGQVSSSLAPCIPYVRGG-GAVPPACCNGIRNVNNLARTTPDRQAACNC--LKQL-SASVPGVNPNNAAALPGKCGVSIPYKISASTNCA------
General information:
TITO was launched using:
RESULT:
Template:
2ALG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34348 for 483 contacts (-71.1/contact) +
2D Compatibility (PS) -7790 + (NN) -1180 + (LL) 208
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -47410.0 ( -98.16 by residue)
QMean score : 0.251
(partial model without unconserved sides chains):
PDB file :
Tito_2ALG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ALG-query.scw
PDB file :
Tito_Scwrl_2ALG.pdb
: