Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSAAKCKEERRLGINACKAVVYGK-S-PTPACCHRMRVTHL----------GCVCSVITPKLAA--LVDVNRMIELVKGCGRKLP----RHYKCGSITFP
1AFH Chain:A ((3-92))
-----SCGQVASAI-APCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV---
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35446 for 509 contacts (-69.6/contact) +
2D Compatibility (PS) -7490 + (NN) -2382 + (LL) 1008
1D Compatibility (HY) -800 + (ID) 750
Total energy: -45860.0 ( -90.10 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: