Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPTECKVETKLAGNACLAVLYG-KSPSADCCQRVRVTHV----------ECVCPYVSPKVASIIRAYGLNKLIKKIEGCGRAVP----HNLKCGSITIP
1SIY Chain:A ((2-90))
-----TCGQVQGNL-AQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLK---AAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI---
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28152 for 515 contacts (-54.7/contact) +
2D Compatibility (PS) -7405 + (NN) 701 + (LL) -16
1D Compatibility (HY) -800 + (ID) 850
Total energy: -36522.0 ( -70.92 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: