Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCLQVETKLMPCVPYVTGNGG-YVPQPCCDGVKAINNQAVTKSDRQAACRCIKTATSAIHGLNMDILAGLPSKCGVHLPYTLGPSTTCEKIE
2RKN Chain:A ((3-75))
DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43571 for 492 contacts (-88.6/contact) +
2D Compatibility (PS) -7581 + (NN) -1355 + (LL) 908
1D Compatibility (HY) 400 + (ID) 800
Total energy: -51999.0 ( -105.69 by residue)
QMean score : 0.193
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: