Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EEKAACVVT--DLKACLPDIIGETP-PSTKCCTKLKD-----------KKSCFCEYLKNPLIAPY--MTS--AKQVLEACGVPVPVCQRF
1AFH Chain:A ((2-80))
---ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29936 for 408 contacts (-73.4/contact) +
2D Compatibility (PS) -6328 + (NN) -4756 + (LL) 1272
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -44248.0 ( -108.45 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: