Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVVEIVIRNSTYKISCESGKKDHLLHLANSFNKLVSSISHKTGGKGSDTLNFLLAALILEDKVLELTKKLDEINQKRENYKNEKRTEYTEVLDRVNKIIECIKD
1FFV Chain:A ((4-31))
-KIITVNVNGKAQEKAVEPR--TLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLANKGVLHAVQEGFYKEHGLQCGFCT
General information:
TITO was launched using:
RESULT:
Template:
1FFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13233 for 123 contacts (-107.6/contact) +
2D Compatibility (PS) -3093 + (NN) 335 + (LL) 336
1D Compatibility (HY) -2000 + (ID) 150
Total energy: -17805.0 ( -144.76 by residue)
QMean score : 0.671
(partial model without unconserved sides chains):
PDB file :
Tito_1FFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FFV-query.scw
PDB file :
Tito_Scwrl_1FFV.pdb
: