Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNEVVTFGCRLNFYESELIKEALRKAERENVVVVHSCAVTNEAERQVKQKIRKIYKNDPNKEIIVVGCAVQLDPESYSNIPGVSKVLGNQDKLKTENYLLSNNKILVNDNQASKSEPALIDKFKDKSRAFIEVQNGCDHSCTFCSITEARGN---NRSVPINNIIEQIKIFVANGYQEVVFTGVDITDFGTDLFGKPSLGLMVRRVLKD-VPELKRLRLS-SIDVAEVDDELMDLI--VNESRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCHKVKSLRSNIAYGADIIAGFPTETDEMFQDTVNLLEETNTVYLHAFPYSKRKNTPAARMPQVPENVRKERVKNLRKINKAMMSNFYQSLIGTKQSVLVEQNNIGRAENFALVKFTSKIQAKSIVKATIIGMESGYLVGSIIP |
| 4JY8 Chain:A ((64-249)) | -------------------------------------------------------------------------------------------------------------------------------RAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTP-EEIVERARLAVQFGAKTIVLQS------GEDPYYMPD-------VISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYL----LRHETANPVLHRKLRPDTSFENRLNCLLTLKEL--GYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFEKDTACIPCVM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JY8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66258 for 1344 contacts (-49.3/contact) +
2D Compatibility (PS) -19097 + (NN) -8639 + (LL) 10348
1D Compatibility (HY) -13600 + (ID) 2250
Total energy: -99496.0 ( -74.03 by residue)
QMean score : 0.439
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