Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MKLSIYVTLSI----SLVLILLQV---TVTFKDWDSYKEYIVQGLEKTYNAKVHIGGKVEVSLITPKLTVHNVYMQCNN----NKEQKLSTLIGVNKIEVRPSILSLFLFSLQPKSITLLGMKSNRENFINIINAKTSSNAVDI-----VIKGSQVSLNNNFTDYDNIVNIEKVAIGKSKQFSGEIRVDSNDYDFSGKVNIT-----------------KKNVHISVESNFINLLFTG-KKNQAGLQGKLTLTINNSS--DFINDLAKITNLSFLAYVIPGENIEISSNIDFNGNDFT----------ATDLKIKSK------SMQASGIIQNDRKSNHTNIN-ISFS---KVNLDSIRNSSRRIIDIKDLLECFRKVVPRNLSLDFNIEASNIQYQNKILDKSHAILKFADGEIKVDMLLKFPGTNNVSHLSGKVSNSGTL---SEFNGNLLVK----GDNFKSFISC--FFPS----------------IKIKGNQKNQFTLSSELHF----APRILSISNIRFLNDKEFLQGSIKVS-HTKKHNVVGGRFSVHNL-DADKYDYSLFSSLSKMGWLKNLRYDVSIKINANDFKLNDTK--IKDLDFLLKMEKGKLVVDKINLSGEDCDINGSTKILVDQRYTKPLLEVNLTGNKFNGDIFKLPSFIEVKRDSRNKINQIQWSTKQFDFLDNKESFDANVQINAIEFRVGQNVLKDFNLDAVVRNNTVTMRQVSYALEHGQVFFQG----YLRSDSMYTKFLITNLDAK---GIGKAIGIDNVDGRISL---------------NGEIKAQGKSFHGWANNLSGEINLQAQEIE------FTNVDFNSF-----ITNLLNGKNK-------------------SEISTLAHDDIYNGSTLFE--NVIGKANIKNGVCSTSLQFRIDQASGS-ISSNLTLPNFALISLVRFFFILPGHSSPIYIDMHLDGP-----IWHPKMNFDVDQIFSTLKRIRSIKFIFAK---------------------------- |
| 4W8J Chain:A ((33-1178)) | YTPIDISLSLTQFLLSEFVPGAGFVLGLVDIIWGIFGPSQWDAFLVQIEQLINQRIEEFARNQAISRLEGLSNLYQIYAESFREWEADPTNPALREEMRIQFNDMNSALTTAIPLL-AVQNYQVPLLSVYVQAANLHLSVLRDVSVFGQRWGFDAATINSRYNDLTRLIGNYTDYA-VRWYNTGLERVWGPDSRDWVRYNQFRRELTLTVLDIVALFPNYDSRRYPIRTVSQLTREIYTNPVLENFDGSFRGSAQGIERSIRSPHLMDILNSITIYTDAHRGYYYWSGHQIMASP-VGFSGPEFTFPLYGTMGNAAPQQRIVAQLGQGVYRTLSSTLYRRPFNQQLSVLDGTEFAYGTSSNLPSAVYRKSGTVDSLDEIPPQNNNVPPRQGFSHRLSHVSMFRSGFVSIIRAPMFSWIHRSAEVNNIIASDSITQIPAVKGNFLFNGSVISGPGFTGGDLVRLNSSNIQNRGYIEVPIHFPSTSTRYRVRVRYASVTPIHLNVNWGNSSIFSNTVPATATSLDNLQSSDFGYFESANAFTGNIVGVRNFSGTAGVIIDRFEFIPVTATLEAEYNLERAQKAVNALFTSTNQLGLKTNVTDYHIDQVSNLVTYLSDEFSLDEKRELSEKVKHAKRLSDER---NLLQDSNFKDINRERGWGGS---------TGITIQGGDDVFKENYVTLSG------TFDESYPTYLYQKIDESKLKAFTRYQLR-GYIEDSQDLEIYLIRYNAKHETVNVPGTGSSAHHSHHFSLDIDVGSTDLNEDLGVWVIFKIKTQDGHARLGNLEFLEEKPLVGEALARVKRAEKKWRDKREKLEWETNIVYKEAKESVDALFVNSQYDQLQADTNIAMIHAADKRVHSIREAYLPELSVIPGVNAAIFEELEGRIFTAFSLYDARNVIKNGDFNNGLSSWNVKGHVDVEEQNNQRSVLVVPEWE-AEVSQEVRVSPGRGYILRVTAYKEGYGEGSVTIHEIENNTDELKFSNPVGYVTKELEYFPETDKVWIEIGETEGTFIVDSVELLLMEE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4W8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48602 for 5851 contacts (-8.3/contact) +
2D Compatibility (PS) -85526 + (NN) 9817 + (LL) 1168
1D Compatibility (HY) -20400 + (ID) 6600
Total energy: -150143.0 ( -25.66 by residue)
QMean score : 0.124
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