Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------MFKSIFTFSFFTAVSRISGLIRDILIAMVVGATSLADVFFSSFRFASLFRAFFAERAFATSFVPLYSAESRDSKRAFNFASSVISITFIIV----------------LNFCLIMQTFFSYMVQIFTPGFDQSKLALAVTLSRIMMPYIIFASIASLIGGMLQVKQHFASTAIAPIILNLC----------------LIASLLVPYIKTPAHNLSI-AVLIGGM-LQLLLMLFGAYKLKAFFFFSMKLSNEVKLFFKRVIP-------AIINSCVIQISLWIDTIMASFI--PNAVSYIYYADRLNQLPQGVVGTAIGTVLLPLISKQANDTENT--------VKIQNRALNI------------GLML------------------IMPTTAAFIIIPNTILLTLFSYGKFDHYAVQQTAPTLIALSLSLPAFIINKVLLPTFFAKSNLKIPTIFS----------LACLGIN-------VVLNLLLMNKYQHTGIAIATSISTWINS--ILLINYLTINKMYK--ANQVLLLNIA----KILVATAVMSVALYVSSSLSAGLFFDRIFARVIYLAALVVLSA----VIYFGTLYLMFMG------DFKCTKL----------------------- |
| 3VSM Chain:A ((27-659)) | NIQELQNFERWFKNNLSYSFSQKAEKVVNPNRNWNDNTVFDNLSP---WTSVPDFGTVCHTLIG---YCVRYNNTSDTLYQNPELAYNLINGLRIICSKLPDPPPHQQAPWGPVADWYHFTITMPEVFMNITIVLNE---TQHYDEAASLTRYWLGLYLPTAVNSM--GWHRTAGNSMRMGVPYTYSQMLRGYSLAQIRQEQGIQEILNTIAFPYV-TQGNGLHVDSIYIDHIDVRAYGYLINSYFTFAYYTYYFGDEVINTVGLTRAIENVGSPEGVVVPGVMSRNGTLYSNVIGNFITYPLAVHSADYSKVLTKLSKTYYGSVVG-VTNRLAYYESDPTNNIQAPLWTMARRIWNRRGRIINYNANTVSFESGIILQSLNGIMRIPSGTTSTQSFRPTIGQTAIAKTDTAGAILVYAKFAEMNNLQFKSCTLFYDHGMFQLYYNIGVEPNSLNNTNGRVIVLSRDTSVNTNDLSFEAQRINNNNSSEGTTFNGVVCHRVPITNINVPSLTVRSPNSSVELVEQIISFQTMYTATASACYKLNVEGHSDSLRAFRVNSDENIYVNVGNGVKALFNYPWVMVKENNKVSFMSANEDTTIPFSVIMNSFTSIGEPALQYSPSNCFVYGNGFKLNNSTFDLQFIFEIV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -564086 for 3926 contacts (-143.7/contact) +
2D Compatibility (PS) -49026 + (NN) 14260 + (LL) 640
1D Compatibility (HY) -22400 + (ID) 4100
Total energy: -624712.0 ( -159.12 by residue)
QMean score : 0.193
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