Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDGACSGNPGTGGWAAIILFQDYRKDVYGREENTTSNKMELTAVINGLKALKFSCNINLYTDSLYVKSGITEWVSKWKVNGWKTSSKRSVKNIELWKELDNIASQHKINWKWVKAHNGDKHNEEANNLARKAIIDA
1KVB Chain:A ((10-144))
-DGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCHELARAAAMNP
General information:
TITO was launched using:
RESULT:
Template:
1KVB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21556 for 996 contacts (-21.6/contact) +
2D Compatibility (PS) -14642 + (NN) -6002 + (LL) 208
1D Compatibility (HY) -8800 + (ID) 3200
Total energy: -53992.0 ( -54.21 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1KVB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KVB-query.scw
PDB file :
Tito_Scwrl_1KVB.pdb
: