Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLVRKGRLKLSCKKKVPALGKSNPQRRGVCTKVYTTTPRKPNSALRKVARVRISGYGEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGALDLRGVQNRKKARSKYGVKKSS
4B3M Chain:L ((2-118))
-PTINQLVRKGREKVRKKSKVPAL-KGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPK
General information:
TITO was launched using:
RESULT:
Template:
4B3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28151 for 762 contacts (-36.9/contact) +
2D Compatibility (PS) -12360 + (NN) -3980 + (LL) 36
1D Compatibility (HY) -10000 + (ID) 4550
Total energy: -59005.0 ( -77.43 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_4B3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B3M-query.scw
PDB file :
Tito_Scwrl_4B3M.pdb
: