Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVKKNRINEFITAKEVRLVDHNGEMVGVVSIGRALTFAQNVGLDLVEVAPDSIPPVCKILDYSKQKYDAKKKASEAKKKQKTLTIKEIKL-GPNIGDHDYETKLRHARDFLTHGHKIKVTMKFKGRELINTEVGLEKLERLIRDTEDIAKIESAPKREGNQYFLALTTK
1GSO Chain:A ((48-117))
--------------------------IGVTDIPALLDFAQNEKIDLTIVGPEA-PLVKGVVD--------------------TFRAAGLKIFGPTAGAAQLEGSKAFTKDFLAR-HKIPTAEYQNFTEVEPALAYLREKGAPIVIKAKGVIVAMTLEEAEAAVHDMLAGN
General information:
TITO was launched using:
RESULT:
Template:
1GSO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29601 for 415 contacts (-71.3/contact) +
2D Compatibility (PS) -7202 + (NN) 410 + (LL) 3720
1D Compatibility (HY) -4400 + (ID) 1350
Total energy: -38423.0 ( -92.59 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_1GSO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GSO-query.scw
PDB file :
Tito_Scwrl_1GSO.pdb
: