Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNSQLNYPITIELDDIKDTKLKLIKIVARLINKRYRTQKKAAIALKIDQPKVSQINKSKIEGFSLEYLLNLLVALDQDINMKIKHNSQHNIQ
3IVP Chain:A ((8-76))
------------------YDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQ-HPSLQVLYDLVSLLNVSVDEFFLPASSQVKS
General information:
TITO was launched using:
RESULT:
Template:
3IVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24957 for 464 contacts (-53.8/contact) +
2D Compatibility (PS) -7608 + (NN) -6103 + (LL) 1348
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -39520.0 ( -85.17 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_3IVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IVP-query.scw
PDB file :
Tito_Scwrl_3IVP.pdb
: