Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNYRFGTKVLIIGSGAAGYAAAIYAARANLEPVV-----VTGMQPGGQLTITMGVENYPGFVS-IQGPELMKQMRLHVEKVGAEIVNDEIKSVEQLEYSNEYKFRSSGNNDDYYSNAVIIAAGSQAKWLGLESERKFQGYGVSACATCDGA--FFRNKIVAVIGGGNTAVEEAIFLTRFAKEVILIHRRDKLRAEKIMQDRLFANNKIKVIWNHTVEQVLGEENPKKVTGITIKSTKIDEIQELRVNGVFIAIGHAPNTGVFKSFIEMDEQGYIITKPGTTLTSRAGVFAAGDVQDKVYRQAVVAAGTGCMAALDAEKFLECTSK |
| 4UP3 Chain:A ((7-312)) | ---------VVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIITE---TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSASAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGDGD--LLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTE--GPKTSVDGVFACGDVQDRVYRQAIVAAGSGCMAALSCEKWLQTH-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UP3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216248 for 2565 contacts (-84.3/contact) +
2D Compatibility (PS) -32136 + (NN) -11680 + (LL) 552
1D Compatibility (HY) -26000 + (ID) 6750
Total energy: -292262.0 ( -113.94 by residue)
QMean score : 0.528
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