Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLIMNLVTKSAINFTAPAVLPNGEIVDDFCLSEHIKGKYAILLFYPLDFTFVCPTELISLNNRISEFAKRDVEVIGISVDSKFSHYQWRKTSVSNGGIGEISYTLVSDIKKSISRDYGVLYDDS-IALRATFVIDDKFIVRHQSINDMPLGRNMDEFIRIVDAIKHNEEHGEVCPAGWKKGKPAMQASDEGVTDYLNSYSEEL
3VWV Chain:A ((33-190))
-----------------------NGEF-KELKLTDY-RGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPG----------------------
General information:
TITO was launched using:
RESULT:
Template:
3VWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81280 for 1095 contacts (-74.2/contact) +
2D Compatibility (PS) -16908 + (NN) -4026 + (LL) 3560
1D Compatibility (HY) -19200 + (ID) 3950
Total energy: -121804.0 ( -111.24 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3VWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VWV-query.scw
PDB file :
Tito_Scwrl_3VWV.pdb
: