Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYNEKILDHYENPRNVGSLDKNDPSVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKTFGCGSAIASSSLLTEMIKGKTIEDVTKI--KNTQIVEELSLP----------------PVKVHCSVLAEDAIKAAIHDYQSKHSKNES
2QQ4 Chain:J ((8-138))
--YREILLDHYQSPRNFGVLPQATKQAG-GM--NPSCGDQVEVMVLL-EGDTIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEEALR-----------
General information:
TITO was launched using:
RESULT:
Template:
2QQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22556 for 866 contacts (-26.0/contact) +
2D Compatibility (PS) -12001 + (NN) -2626 + (LL) 420
1D Compatibility (HY) -6400 + (ID) 2150
Total energy: -45313.0 ( -52.32 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_2QQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QQ4-query.scw
PDB file :
Tito_Scwrl_2QQ4.pdb
: