Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEYQGVNTVKKDRKPITITANAVERIRYLLDQKQYTNLERSEEAIGIRVLIKQKGCSGLKYDIEYAYDIHPLESVIEESCSDGQKVKVLIDPKSVMFILGSEMDYVEEKFSSGFVFKNPNEKGKCGCGESFHV
1NWB Chain:A ((4-101))
----------QAQQFIFKVTDKAVEEIKKVAQENN-------IENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEY-----DGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP--------------
General information:
TITO was launched using:
RESULT:
Template:
1NWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35497 for 678 contacts (-52.4/contact) +
2D Compatibility (PS) -10723 + (NN) -3863 + (LL) 1040
1D Compatibility (HY) -8000 + (ID) 1500
Total energy: -58543.0 ( -86.35 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_1NWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NWB-query.scw
PDB file :
Tito_Scwrl_1NWB.pdb
: