Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIYMNTIKNTIYTEAIFSKDEKHRYLLKKTWDEKKPACTVITMYPHLDGVL----SLDLTTVLILNQLANSERYG--AVYLVNLFSNIKTPENLKHIKEPYDKHTDIHLMKAIS-ESDTVILAYGAYAKRPVVVERVEQVMEMLKPHKKKVKKLINPATNEIMHPLNPKARQKWTLKA
1VK2 Chain:A ((49-142))
----------------------------------LDTRIVFVGEGPGEEEDKTGRPFVGRAGMLL-TELLRESGIRREDVYICNVVKCRPPNNRTPT--PEEQAACGHFLLAQIEIINPDVIVALGATALS------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VK2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33110 for 567 contacts (-58.4/contact) +
2D Compatibility (PS) -9439 + (NN) -4774 + (LL) 7744
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -44679.0 ( -78.80 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_1VK2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK2-query.scw
PDB file :
Tito_Scwrl_1VK2.pdb
: