Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKFNNWILNAISGSQTDKNETTEELKGAKFIILYAYSMLVLLALVISNIFIHILEPKLSITTQIIIVLILIEALIGLRFLKAYDVKRGKDKENKKNSKDFVKLKSILVAILFTSLALTAGTVADIYGFTDLGNTRSDLIVWSIGGIIFGLVCYTMEDKK
1AFO Chain:A ((62-101))
----------------------------------------------------VQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK--------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1AFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8254 for 151 contacts (-54.7/contact) +
2D Compatibility (PS) -4230 + (NN) -2974 + (LL) 9568
1D Compatibility (HY) -3600 + (ID) 450
Total energy: -9940.0 ( -65.83 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_1AFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFO-query.scw
PDB file :
Tito_Scwrl_1AFO.pdb
: